High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families

January 2008
BMC Genomics;2008 Supplement 2, Vol. 9, p593
Academic Journal
No abstract available.


Related Articles

  • Genome-Wide Identification of Different Dormant Medicago sativa L. MicroRNAs in Response to Fall Dormancy. Fan, Wenna; Zhang, Senhao; Du, Hongqi; Sun, Xiaoge; Shi, Yinghua; Wang, Chengzhang // PLoS ONE;Dec2014, Vol. 9 Issue 12, p1 

    Background: MicroRNAs (miRNAs) are a class of regulatory small RNAs (sRNAs) that regulate gene post-transcriptional expression in plants and animals. High-throughput sequencing technology is capable of identifying small RNAs in plant species. Alfalfa (Medicago sativa L.) is one of the most...

  • microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula. Eyles, Rodney; Williams, Philip; Ohms, Stephen; Weiller, Georg; Ogilvie, Huw; Djordjevic, Michael; Imin, Nijat // Planta;Jul2013, Vol. 238 Issue 1, p91 

    Plant root architecture is regulated by the initiation and modulation of cell division in regions containing pluripotent stem cells known as meristems. In roots, meristems are formed early in embryogenesis, in the case of the root apical meristem (RAM), and during organogenesis at the site of...

  • Small RNA pathways and diversity in model legumes: lessons from genomics. Bustos-Sanmamed, Pilar; Bazin, Jérémie; Hartmann, Caroline; Crespi, Martin; Lelandais-Brière, Christine // Frontiers in Plant Science;Jul2013, Vol. 4, p1 

    Small non-coding RNAs (smRNA) participate in the regulation of development, cell differentiation, adaptation to environmental constraints and defense responses in plants. They negatively regulate gene expression by degrading specific mRNA targets, repressing their translation or modifying...

  • Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica. Bosheng Li; Yurong Qin; Hui Duan; Weilun Yin; Xinli Xia // Journal of Experimental Botany;Jul2011, Vol. 62 Issue 11, p3765 

    MicroRNAs (miRNAs) are small, non-coding RNAs that play essential roles in plant growth, development, and stress response. Populus euphratica is a typical abiotic stress-resistant woody species. This study presents an efficient method for genome-wide discovery of new drought stress responsive...

  • Genome-Wide Identification of Reverse Complementary microRNA Genes in Plants. Chaogang Shao; Xiaoxia Ma; Xiufang Xu; Huizhong Wang; Yijun Meng // PLoS ONE;Oct2012, Vol. 7 Issue 10, Special section p1 

    MicroRNAs (miRNAs) are ,21-nucleotide small RNAs (sRNAs) with essential regulatory roles in plants. They are generated from stem-loop-structured precursors through two sequential Dicer-like 1 (DCL1)-mediated cleavages. To date, hundreds of plant miRNAs have been uncovered. However, the question,...

  • Integrated analysis of miRNA and mRNA expression profiles in response to Cd exposure in rice seedlings. Mingfeng Tang; Donghai Mao; Liwei Xu; Dayong Li; Shuhui Song; Caiyan Chen // BMC Genomics;2014, Vol. 15 Issue 1, p835 

    Background: Independent transcriptome profile analyses of miRNAs or mRNAs under conditions of cadmium (Cd) stress have been widely reported in plants. However, a combined analysis of sRNA sequencing expression data with miRNA target expression data to infer the relative activities of miRNAs that...

  • Unravelling the complexity of microRNA-mediated gene regulation in black pepper ( Piper nigrum L.) using high-throughput small RNA profiling. Asha, Srinivasan; Sreekumar, Sweda; Soniya, E. // Plant Cell Reports;Jan2016, Vol. 35 Issue 1, p53 

    Key message: Analysis of high-throughput small RNA deep sequencing data, in combination with black pepper transcriptome sequences revealed microRNA-mediated gene regulation in black pepper ( Piper nigrum L.). Abstract: Black pepper is an important spice crop and its berries are used worldwide as...

  • Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide highthroughput sequencing.  // BMC Genomics;2011, Vol. 12 Issue 1, p367 

    The article presents a study which aimed at identifying the drought-responsive micro-RNAs (miRNAs) in Medicago truncatula. The study identified several known drought-responsive miRNAs, which play a crucial regulatory role in a plant's development and stress response and used genome-wide...

  • Small RNA and degradóme sequencing reveal complex miRNA regulation during cotton somatic embryogenesis. Xiyan Yang; Lichen Wang; Daojun Yuan; Lindsey, Keith; Xianlong Zhang // Journal of Experimental Botany;Jun2013, Vol. 64 Issue 6, p1521 

    MicroRNAs (miRNAs) are endogenous non-coding ~21 nucleotide RNAs that regulate gene expression at the transcriptional and post-transcriptional levels in plants and animals. They play an important role in development, abiotic stress, and pathogen responses. miRNAs with their targets have been...

  • Identification of miRNAs and their target genes in developing maize ears by combined small RNA and degradome sequencing. Hongjun Liu; Cheng Qin; Zhe Chen; Tao Zuo; Xuerong Yang; Huangkai Zhou; Meng Xu; Shiliang Cao; Yaou Shen; Haijian Lin; Xiujing He; Yinchao Zhang; Lujiang Li; Haiping Ding; Lübberstedt, Thomas; Zhiming Zhang; Guangtang Pan // BMC Genomics;2014, Vol. 15 Issue 1, p1 

    Background In plants, microRNAs (miRNAs) are endogenous ~22 nt RNAs that play important regulatory roles in many aspects of plant biology, including metabolism, hormone response, epigenetic control of transposable elements, and stress response. Extensive studies of miRNAs have been performed in...


Read the Article


Sorry, but this item is not currently available from your library.

Try another library?
Sign out of this library

Other Topics