TITLE

Empirical Bayes accomodation of batch-effects in microarray data using identical replicate reference samples: application to RNA expression profiling of blood from Duchenne muscular dystrophy patients

PUB. DATE
January 2008
SOURCE
BMC Genomics;2008 Supplement 2, Vol. 9, p494
SOURCE TYPE
Academic Journal
DOC. TYPE
Article
ABSTRACT
No abstract available.
ACCESSION #
43774370

 

Related Articles

  • Alignment of gene expression profiles from test samples against a reference database: New method for context-specific interpretation of microarray data. Kilpinen, Sami K.; Ojala, Kalle A.; Kallioniemi, lli P. // BioData Mining;2011, Vol. 4 Issue 1, p5 

    Background: Gene expression microarray data have been organized and made available as public databases, but the utilization of such highly heterogeneous reference datasets in the interpretation of data from individual test samples is not as developed as e.g. in the field of nucleotide sequence...

  • Empirical Evaluation of Oligonucleotide Probe Selection for DNA Microarrays. Mulle, Jennifer G.; Patel, Viren C.; Warren, Stephen T.; Hegde, Madhuri R.; Cutler, David J.; Zwick, Michael E. // PLoS ONE;2010, Vol. 5 Issue 3, p1 

    DNA-based microarrays are increasingly central to biomedical research. Selecting oligonucleotide sequences that will behave consistently across experiments is essential to the design, production and performance of DNA microarrays. Here our aim was to improve on probe design parameters by...

  • PTC drug wins EU panel vote. Investor's Business Daily // Investors Business Daily;5/27/2014, pA02 

    The biotech's muscular-dystrophy drug got a surprise recommendation from the Committee for Medicinal Products for Human Use. The panel recommended conditional approval of PTC Therapeutics' ([STOCK[PTCT]]) drug Translarna for patients with Duchenne muscular dystrophy, based on phase-2 data. PTC...

  • Corticosteroid effects on blood gene expression in Duchenne muscular dystrophy. Lit, L.; Sharp, F. R.; Apperson, M.; Liu, D. Z.; Walker, W. L.; Liao, I.; Xu, H.; Ander, B. P.; Wong, B. // Pharmacogenomics Journal;Dec2009, Vol. 9 Issue 6, p411 

    Though Deflazacort and prednisone improve clinical endpoints in Duchenne muscular dystrophy (DMD) patients, Deflazacort produces fewer side effects. As mechanisms of improvement and side effect differences remain unknown, we evaluated effects of corticosteroid administration on gene expression...

  • Cognitive and Psychological Profile of Males With Becker Muscular Dystrophy. Young, Helen K.; Barton, Belinda A.; Waisbren, Susan; Dale, Lourdes Portales; Ryan, Monique M.; Webster, Richard I.; North, Kathryn N. // Journal of Child Neurology;Feb2008, Vol. 23 Issue 2, p155 

    Duchenne and Becker muscular dystrophy are allelic X-linked disorders causing progressive muscle weakness in males. Duchenne muscular dystrophy is caused by absence of dystrophin in muscle and brain; boys with Duchenne muscular dystrophy have a static cognitive impairment with mean Full Scale lQ...

  • Long-term persistence of donor nuclei in a Duchenne muscular dystrophy patient receiving bone marrow transplantation. Gussoni, Emanuela; Bennett, Richard R.; Muskiewicz, Kristina R.; Meyerrose, Todd; Nolta, Jan A.; Gilgoff, Irene; Stein, James; Yiu-mo Chan; Lidov, Hart G.; Bonnemann, Carsten G.; von Moers, Arpad; Morris, Glenn E.; den Dunnen, Johan T.; Chamberlain, Jeffrey S.; Kunkel, Louis M.; Weinberg, Kenneth // Journal of Clinical Investigation;9/15/2002, Vol. 110 Issue 6, p807 

    Analyzes muscle biopsies from a Duchenne muscular dystrophy (DMD) patient who received bone marrow transplantation for X-linked severe combined immune deficiency. Analysis of skin, marrow and peripheral blood DNA samples; Clinical history of the patient; Molecular diagnosis of DMD-BMT1.

  • Correcting for intra-experiment variation in Illumina BeadChip data is necessary to generate robust gene-expression profiles. Kitchen, Robert R.; Sabine, Vicky S.; Sims, Andrew H.; Macaskill, E. Jane; Renshaw, Lorna; Thomas, Jeremy S.; van Hemert, Jano I.; Dixon, J. Michael; Bartlett, John M. S. // BMC Genomics;2010, Vol. 11, p134 

    Background: Microarray technology is a popular means of producing whole genome transcriptional profiles, however high cost and scarcity of mRNA has led many studies to be conducted based on the analysis of single samples. We exploit the design of the Illumina platform, specifically multiple...

  • Inadvertent bronchial intubation by tracheostomy tube in advanced duchenne muscular dystrophy. Kapoor, Dheeraj; Sachan, Shikha; Singh, Manpreet; Singh, Jasveer // Anaesthesia, Pain & Intensive Care;Jan-Mar2014, Vol. 18 Issue 1, p119 

    A letter to the editor is presented which describes the inadvertent bronchial intubation using tracheostomy tube in advanced duchenne muscular dystrophy patient.

  • Duchenne, Guillaume B. A.  // Taber's Cyclopedic Medical Dictionary;2005, p642 

    Definitions of medical terms derived from the name of French neurologist Guillaume B. A. Duchenne are presented. "Duchenne's disease" refers to the degeneration of the posterior roots and column of the spinal cord and of the brainstem. "Duchenne's muscular dystrophy" refers to pseudohypertrophic...

  • Corrigendum: Reading Frame Correction by Targeted Genome Editing Restores Dystrophin Expression in Cells From Duchenne Muscular Dystrophy Patients.  // Molecular Therapy;Nov2013, Vol. 21 Issue 11, p2130 

    A correction is to the article "Reading Frame Correction by Targeted Genome Editing Restores Dystrophin Expression in Cells From Duchenne Muscular Dystrophy Patients" that was published in a 2013 issue is presented.

Share

Read the Article

Courtesy of THE LIBRARY OF VIRGINIA

Sorry, but this item is not currently available from your library.

Try another library?
Sign out of this library

Other Topics