Detection of transcriptional difference of porcine imprinted genes using different microarray platforms

January 2006
BMC Genomics;2006, Vol. 7, p328
Academic Journal
No abstract available.


Related Articles

  • Characterization and imprinting analysis of COPG2 and MEST genes in pigs. Caode Jiang; Shun Li; Ping Shi; Ranran Dong; Jiawei Tian; Changyan Deng // Animal Science Papers & Reports;2011, Vol. 29 Issue 3, p247 

    MEST and COPG2 in human MEST imprinted cluster are two of good candidate genes responsible for primordial growth retardation including Silver--Russell syndrome. In order to increase understanding of these genes in pigs, their cDNAs are characterized in this report. By real-time quantitative...

  • Assessing the Detection Capacity of Microarrays as Bio/Nanosensing Platforms. Lee, Ju Seok; Joon Jin Song; Deaton, Russell; Jin-Woo Kim // BioMed Research International;2013, Vol. 2013, p1 

    Microarray is one of the most powerful detection systems with multiplexing and high throughput capability. It has significant potential as a versatile biosensing platform for environmental monitoring, pathogen detection, medical therapeutics, and drug screening to name a few. To date, however,...

  • Assessment of genomic imprinting of PPP1R9A, NAP1L5 and PEG3 in pigs. Jiang, C.; Li, S.; Deng, C. // Russian Journal of Genetics;Apr2011, Vol. 47 Issue 4, p471 

    Imprinted genes play significant roles in the regulation of fetal growth and development, function of the placenta, and maternal nurturing behaviour in mammals. At present, few imprinted genes have been reported in pigs compared to human and mouse. In order to increase understanding of imprinted...

  • Conservation of genomic imprinting at the NDN, MAGEL2 and MEST loci in pigs. Feng Wei Zhang; Zheng Bin Han; Chang Yan Deng; Hong Juan He; Qiong Wu // Genes & Genetic Systems;2012, Vol. 87 Issue 1, p53 

    Imprinted genes have important effects on the regulation of fetal growth, development, and postnatal behavior. However, the study of imprinted genes has been limited in mammalian species other than human and mouse. Therefore, the study of porcine imprinted genes is useful for defining the extent...

  • Relationship of porcine IGF2 imprinting status to DNA methylation at the H19 DMD and the IGF2 DMRs 1 and 2. Braunschweig, Martin H.; Owczarek-Lipska, Marta; Stahlberger-Saitbekova, Nasikhat // BMC Genetics;2011, Vol. 12 Issue 1, p47 

    Background: Porcine IGF2 and the H19 genes are imprinted. The IGF2 is paternally expressed, while the H19 gene is maternally expressed. Extensive studies in mice established a boundary model indicating that the H19 differentially methylated domain (DMD) controls, upon binding with the CTCF...

  • Evaluation of external RNA controls for the standardisation of gene expression biomarker measurements. Devonshire, Alison S.; Elaswarapu, Ramnath; Foy, Carole A. // BMC Genomics;2010, Vol. 11, p662 

    Background: Gene expression profiling is an important approach for detecting diagnostic and prognostic biomarkers, and predicting drug safety. The development of a wide range of technologies and platforms for measuring mRNA expression makes the evaluation and standardization of transcriptomic...

  • Comparing microarrrays?  // Nature Methods;May2005, Vol. 2 Issue 5, p321 

    Shares the author's insights on the importance of DNA microarrays. Impact of DNA microarrays on the pace of genetics research; Usefulness of microarrays for defining expression profiles in tumors; Degree to which different laboratories or different array platforms contribute to data variability.

  • Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells. Zhao, Shanrong; Fung-Leung, Wai-Ping; Bittner, Anton; Ngo, Karen; Liu, Xuejun // PLoS ONE;Jan2014, Vol. 9 Issue 1, p1 

    To demonstrate the benefits of RNA-Seq over microarray in transcriptome profiling, both RNA-Seq and microarray analyses were performed on RNA samples from a human T cell activation experiment. In contrast to other reports, our analyses focused on the difference, rather than similarity, between...

  • Comparison of the latest commercial short and long oligonucleotide microarray technologies. Reynies, Aurelien de; Geromin, Daniela; Cayuela, Jean-Michel; Petel, Fabien; Dessen, Philippe; Sigaux, Francois; Rickman, David S // BMC Genomics;2006, Vol. 7, p51 

    Background: We compared the relative precision and accuracy of expression measurements obtained from three different state-of-the-art commercial short and long-oligonucleotide microarray platforms (Affymetrix GeneChipâ„¢ , GE Healthcare CodeLinkâ„¢ and Agilent Technologies). The design...

  • Getting Started in Tiling Microarray Analysis. Liu, X. Shirley // PLoS Computational Biology;Oct2007, Vol. 3 Issue 10, pe183 

    The article offers tips on getting started in genomic tiling microarray analysis. It cites commercial sources that provide tiling microarrays with different probe lengths and spacing, including Affymetrix. It says (chromatin immunoprecipitation (ChIP)-chip is the most common application for the...


Read the Article


Sorry, but this item is not currently available from your library.

Try another library?
Sign out of this library

Other Topics