CGHScan: finding variable regions using high-density microarray comparative genomic hybridization data

January 2006
BMC Genomics;2006, Vol. 7, p91
Academic Journal
No abstract available.


Related Articles

  • Significance of genomic instability in breast cancer in atomic bomb survivors: analysis of microarray-comparative genomic hybridization.  // Radiation Oncology;2011, Vol. 6 Issue 1, p168 

    The article reports on a study conducted to clarify the effect of atomic bomb (A-bomb) radiation exposure on genomic instability (GIN). It states GIN is an important hallmark of carcinogenesis, in archival formalin-fixed paraffin-embedded (FFPE) tissues of breast cancer by using...

  • Genetic Diversity in Yeast Assessed With Whole-Genome Oligonucleotide Arrays. Winzeler, Elizabeth A.; Castillo-Davis, Cristian I.; Oshiro, Guy; Liang, David; Richards, Daniel R.; Yingyao Zhou; Hartl, Daniel L. // Genetics;Jan2003, Vol. 163 Issue 1, p79 

    The availability of a complete genome sequence allows the detailed study of intraspecies variability. Here we use high-density oligonucleotide arrays to discover 11,115 single-feature polymorphisms (SFPs) existing in one or more of 14 different yeast strains. We use these SFPs to define regions...

  • Molecular fish on chips. Goffeau, Andre // Nature;1/16/1997, Vol. 385 Issue 6613, p202 

    Provides background and analysis for a series of papers that report the use of high-density oligonucleotide arrays for large-scale analysis of genomic data. The types of gene sequences that are desired by 2005; The variation of molecular hybridization of polynucleotides; Papers published in...

  • Phelan-McDermid syndrome presenting with autistic spectrum: are we underdiagnosing chromosomal diseases in patients with autism? Rezende Pinto, Wladimir; Pedroso, José; Souza, Paulo; Oliveira, Acary; Barsottini, Orlando // Journal of Neurology;Nov2013, Vol. 260 Issue 11, p2900 

    The article describes a case of Phelan-McDermid syndrome presenting with autistic spectrum disorder (ASD) in a 9-year-old girl. The patient presented with delayed motor skills and language impairment since childhood, associated with hypotonia. Phelan-McDermid syndrome was diagnosed based on...

  • A highly redundant BAC library of Atlantic salmon (Salmo salar): an important tool for salmon projects. Thorsen, Jim; Zhu, Baoli; Frengen, Eirik; Kazutoyo Osoegawa; de Jong, Pieter J; Koop, Ben F&; Davidson, William S; Høyheim, Bjørn // BMC Genomics;2005, Vol. 6, p1 

    Background: As farming of Atlantic salmon is growing as an aquaculture enterprise, the need to identify the genomic mechanisms for specific traits is becoming more important in breeding and management of the animal. Traits of importance might be related to growth, disease resistance, food...

  • Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Wilhelm, Brian T.; Marguerat, Samuel; Watt, Stephen; Schubert, Falk; Wood, Valerie; Goodhead, Ian; Penkett, Christopher J.; Rogers, Jane; B&;#x00E4;hler, Jürg // Nature;6/26/2008, Vol. 453 Issue 7199, p1239 

    Recent data from several organisms indicate that the transcribed portions of genomes are larger and more complex than expected, and that many functional properties of transcripts are based not on coding sequences but on regulatory sequences in untranslated regions or non-coding RNAs. Alternative...

  • A high-resolution comparative map of canine Chromosome 5q14.3—q33 constructed utilizing the 1.5× canine genomesequence HIGH-RESOLUTION MAP OF CANINE CHROMOSOME 5q14.3—q33. Comstock, Kenine E.; Lingaas, Frode; Kirkness, Ewen F.; Hitte, Christophe; Thomas, Rachael; Breen, Matthew; Galibert, Francis; Ostrander, Elaine A. // Mammalian Genome;Jul2004, Vol. 15 Issue 7, p544 

    A high-density map of the region of canine Chromosome 5 (CFA5) surrounding the evolutionary breakpoint between human Chromosomes 1p32 and 17p11 was constructed by integrating a radiation hybrid map including 41 microsatellites, 10 BACs, and 59 genes and a linkage map including 18 markers. A...

  • HIA: a genome mapper using hybrid index-based sequence alignment. Jongpill Choi; Kiejung Park; Seong Beom Cho; Myungguen Chung // Algorithms for Molecular Biology;12/23/2015, Vol. 10, p1 

    Background: A number of alignment tools have been developed to align sequencing reads to the human reference genome. The scale of information from next-generation sequencing (NGS) experiments, however, is increasing rapidly. Recent studies based on NGS technology have routinely produced exome or...

  • A direct repeat sequence associated with the centromeric retrotransposons in wheat. Ito, Hidetaka; Nasuda, Shuhei; Endo, Takashi R. // Genome;Aug2004, Vol. 47 Issue 4, p747 

    A high-density BAC filter of Triticum monococcum was screened for the presence of a centromeric retrotransposon using the integrase region as a probe. Southern hybridization to the BAC digests using total genomic DNA probes of Triticum monococcum, Triticum aestivum, and Hordeum vulgare detected...

  • A high-resolution survey of deletion polymorphism in the human genome. Conrad, Donald F.; Andrews, T. Daniel; Carter, Nigel P.; Hurles, Matthew E.; Pritchard, Jonathan K. // Nature Genetics;Jan2006, Vol. 38 Issue 1, p75 

    Recent work has shown that copy number polymorphism is an important class of genetic variation in human genomes. Here we report a new method that uses SNP genotype data from parent-offspring trios to identify polymorphic deletions. We applied this method to data from the International HapMap...


Read the Article


Sorry, but this item is not currently available from your library.

Try another library?
Sign out of this library

Other Topics