TITLE

ILOOP -- a web application for two-channel microarray interwoven loop design

AUTHOR(S)
Pirooznia, Mehdi; Ping Gong; Yang, Jack Y.; Qu Yang, Mary; Perkins, Edward J.; Youping Deng
PUB. DATE
January 2008
SOURCE
BMC Genomics;2008 Supplement 2, Vol. 9, Special section p1
SOURCE TYPE
Academic Journal
DOC. TYPE
Article
ABSTRACT
Microarray technology is widely applied to address complex scientific questions. However, there remain fundamental issues on how to design experiments to ensure that the resulting data enables robust statistical analysis. Interwoven loop design has several advantages over other designs. However it suffers in the complexity of design. We have implemented an online web application which allows users to find optimal loop designs for two-color microarray experiments. Given a number of conditions (such as treatments or time points) and replicates, the application will find the best possible design of the experiment and output experimental parameters. It is freely available from http://mcbc.usm.edu/iloop.
ACCESSION #
35701845

 

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